Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015813144.1_cds_XP_016497432.1_11554
CDS Infomation

[gene=LOC107816246] [db_xref=GeneID:107816246] [protein=putative pentatricopeptide repeat-containing protein At3g28640 isoform X2] [protein_id=XP_016497432.1] [location=join(30248..30428,30610..31730)] [gbkey=CDS]
Sequence

ATGGAAGTGGTGCATGTCCATGGCAGAAAAGTGCACCAATACGCGCCAACTCAAAGCCAT
CCACGCCATTTACATTACTCTTGGTCTTCACCGCAACACTTACGCCGTAAGCAAGCTCCT
CGATTTTTCTGCCCTTTCAAATTCCGCCGACCTTTCCTATGCCTCACGAATCTTCGCGCA
GAGGGAAAGCAAATGCACAGTTGGGTAGTTAAGAATTCTTTTTCCGTGTCAGATGCACAT
GTACAGACAGCATTAATTCGGTTCTACACCAACTGCAAAGCATTGGATTATGCACGCAAG
ATGTTCGATGAAATTACTGACATTGATGTTATTCAATGTAATGTTTTAATGAGTGGGCAC
CTTCAATGCGGACTAGCCAAGGAGGCATTGAGTATTTTCCAAGATATGCTGGGGCATGGA
GTTAGTGCGGATGAGTATTGTGTGACCACAGCACTTGCGGCCTGTGCTCATTTAGGTGCT
CTTGAGCAAGGGAAATGGATTCATGAGCATGTTATGAAGAGAGAATGGGTTGAATCTGAT
GTTTTTATCGGCTCTGCTCTTGTTGATATGTACGCTAAGTGTGGGTGTATTCACATTGCT
TCTGAGGTATTCGACAGCATGCCTACGAGAAACAGGCATTCGTGGGCAACAATGATTCGT
GGGTTCGCGGTCCATGGTCGTCCTGAGCTAGCAATAAGCTGTTTGGAGAGGATGCAAGTG
GTCGATGGACTTAAGCCTGATGGTATTGTCATTCTTGCAGTTTTAGCAGCGTGTGCACAT
GCAGGGCTTCAGAAAGAAGGCCAGCTTTTGTTGGATAAGATGGAATCATTATATGATATT
GCACCGGAACATGAACACTTCAGTTGTGTAGTGGACTTGTTATGCAGGGCTGGAAAATTG
GATGACGCACTTAAGCTCATTAGAAGGATGCCAATGAAACCGCGGGCCTCAGTTTGGGGC
GCGTTATTGAGTGGTTGCCGAAAGCACAACAATGTTAGTCTTGGAGAACTTGCCGTTAAA
GAGATTTTGTTGGTAGAAGATGGCAATGAAGCTGAAGAAGATTCTGCTTATGTTCAGTTA
TCCAATATATATTTGGCAGCTCGACAATGTGATGATGCACGTCGAATCAGGAGGATGATT
GGTGACAAAGGGTTCAGGAAGACCCCTGGGTACAGTGCAATTGAGATTGATGGGATGGTT
AATGAGTTTGTAGCTGGAGATGTCTCCCATTCATGTTTAACTAACATACATGAGGTGCTT
GACTTGATATATCTGGATCCTGATTTCAACAACCTAATATAG

Peptide Sequence

PEP ID

XP_016497432.1
PEP Infomation

PREDICTED: putative pentatricopeptide repeat-containing protein At3g28640 isoform X2 [Nicotiana tabacum]
Sequence

MEVVHVHGRKVHQYAPTQSHPRHLHYSWSSPQHLRRKQAPRFFCPFKFRRPFLCLTNLRA
EGKQMHSWVVKNSFSVSDAHVQTALIRFYTNCKALDYARKMFDEITDIDVIQCNVLMSGH
LQCGLAKEALSIFQDMLGHGVSADEYCVTTALAACAHLGALEQGKWIHEHVMKREWVESD
VFIGSALVDMYAKCGCIHIASEVFDSMPTRNRHSWATMIRGFAVHGRPELAISCLERMQV
VDGLKPDGIVILAVLAACAHAGLQKEGQLLLDKMESLYDIAPEHEHFSCVVDLLCRAGKL
DDALKLIRRMPMKPRASVWGALLSGCRKHNNVSLGELAVKEILLVEDGNEAEEDSAYVQL
SNIYLAARQCDDARRIRRMIGDKGFRKTPGYSAIEIDGMVNEFVAGDVSHSCLTNIHEVL
DLIYLDPDFNNLI

Transcript Sequence

Gene sequence data has not been registered.